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Faculty Profile

Profile Picture

Dr. (Mrs) Pooja Tripathi

Assistant Professor

+91-9628043814

pooja.tripathi@shuats.edu.in

Department of Computational Biology & Bioinformatics

+91-9628043814

pooja.tripathi@shuats.edu.in

Department of Computational Biology & Bioinformatics

Educational Details

Doctorate

Ph.D
Univ of Allahabad

Graduated in 2013

PG

M.Sc
Univ of Allahabad

Graduated in 2008

UG

B.Sc
Univ of Allahabad

Graduated in 2006

Professional Summary

1. Assistant Professor, Department of Computational Biology and Bioinformatics, JIBB, SHUATS, Prayagraj, November 2018 to till now.
2. Guest Faculty at Center of Bioinformatics, University of Allahabad, Prayagraj, during the academic year Jul 2017-Nov 2018.
4. Post Doctoral Fellow (February 2016 – January 2017) Department of Plant Pathology and Weed Research, Agriculture Research Organization, The Volcani Center, Israel
5. Post Doctoral Fellow (December 2012 – January 2016) Department of Plant and Environmental Science, Weizmann Institute of Science, Israel.
6. Ph.D. in Bioinformatics (2013) from University of Allahabad, Prayagraj, India.
7. Master of Science in Bio-Informatics (2008) from University of Allahabad, Prayagraj, India.
8. Bachelor of Sciences in Applied Sciences (2006) from University of Allahabad, Prayagraj, India.

Area of Specialization

Computational Biology, Bioinformatics, Machine learning, Plant Genomics, Plant miRNA

Expertise

Machine learning, NGS data analysis, Plant Genomics, Plant small RNAs.

Publications

  1. Nidhi, S., Anand, U., Oleksak, P., Tripathi, P., Lal, J.A., Thomas, G., Kuca, K. and *Tripathi, V. (2021) Novel CRISPR-Cas systems: An updated review of current achievements, applications, and future research perspectives. Int. J. Mol. Sci. 22(7):3327. (I.F. = 5.923).
  2. Shilo, S., Tripathi, P., Melamed-Bessudo, C., Tzfadia, O., Muth, T.R., Levy, A.A. (2017) T-DNA-genome junctions form early after infection and are influenced by the chromatin state of the host genome. PLOS Genetics,13(7):e1006875. (I.F.= 6.1)
  3. Anand, U., Reddy, B., Singh, V.K., Singh, A.K., Kesari, K.K., Tripathi, P., Kumar, P., Tripathi, V. and Gandara, J.S. (2021) Environmental and Human Health Risks by Antibiotic-Resistant Bacteria (ARB), Antibiotic Resistance Genes (ARG) and Emerging Contaminants (ECs) from Municipal Solid Waste (MSW) Landfill. Antibiotics 10(4), 374. (I.F. = 4.639).
  4. Soni, R., Pal, A.K., Tripathi, P. Lal, J.A., Kesari, K.K. and Tripathi, V. (2020) An overview of nanoscale materials on the removal of wastewater contaminants. Appl Water Sci 10, 189. (I.F. = 3.874)
  5. Tripathi, V. and *Tripathi, P. (2019) Detecting antimicrobial peptides by exploring the mutual information of their sequences. J. Biomol. Struct. Dyn. 18:1-7. (I.F. = 3.220)
  6. Tripathi, P., Singh, J., Lal, J.A. and Tripathi, V. (2019) Next Generation Sequencing: An emerging tool for Drug Designing. Curr. Pharm. Des., 25(31):3350-3357. (I.F. =3.116).
  7. *Mishra, P. and Pandey, P.N. (2017) Spectral graph theory combined with pseudo amino acid compositions for an alignment free protein fold classification. J. Theor. Biol., 424:49-54. (I.F.= 2.691)
  8. *Mishra, P. and Pandey, P.N. (2012) Elman RNN based classification of proteins sequences on account of their mutual information. J. Theor. Biol., 311, 40-45. (I.F.= 2.691)
  9. Kesari K. K., Soni R., Jamal, Q.M.S., Tripathi, P., Siddiqui, M.H., Kumar P., Lal J.A., Tripathi V. and Ruokolainen, J. (2021) Wastewater treatment and reuse: A review of its applications and health implications, Water Air Soil Pollut. 232, 208. (I.F. = 2.520).
  10. Tripathi, V., Tripathi, P. and Gupta, D., (2014) In Silico Analysis of Different Generation β-Lactams Antibiotics with Penicillin-binding protein-2 of Neisseria meningitidisInterdiscip. Sci. 6: 1-12(I.F. =2.233).
  11. Tripathi, V., and Tripathi, P., (2014) Molecular phylogenetics and comparative modeling of MnSOD, an enzyme involved during environmental stress conditions in Oryza sativaInterdiscip Sci. 6(4):251-8. (I.F. =2.233).
  12. *Mishra, P. and Pandey, P.N. Recursive neural networks for predicting protein folds from their pseudo amino acid composition. Adv. Sci. Lett., 2012, 11, 63-66.
  13. *Mishra, P. and Pandey, P.N. Recurssive Neural Networks Based Recognition of Protein Folds on Account of Residue Correlation within Protein Sequences. Journal of International Academy of Physical Sciences, 2011, 15, 515-524.
  14. *Mishra, P. and Pandey, P.N. A Graph-based Clustering method applied to Protein sequences. Bioinformation, 2011, 6(10): 372-374
  15. *Mishra, P. Molecular dynamics simulation of human prion protein to Detect Difference in the Structures of Normal and Diseased Form. GERF Bulletin of Biosciences, 2010, 1(1) 16-20.
  16. Sudeep Roy, Pooja Mishra, A K Kukreja, Ashok Sharma. Application of artificial neural networks for predicting maximum in vitro shoot biomass production of Safed musli (Chlorophytum borivillianum), Open Access Scientific Reports, 2012, 1(10), 1-6.
  17. Adbarzi, S., Tripathi, P., Kant, R. and Tripathi, V. (2020) Assessment of bacterial diversity and their antibiotic resistance profiles in wastewater treatment plants and their receiving Ganges River in Prayagraj (Allahabad), India. Vegetos. 33, 744–749.
  18. Adbarzi, S.S.M., Tripathi, P., Chaudhary, K.K., Kant, R. and Tripathi, V. (2020) Assessment of Physico-Chemical Properties of Pre and Post- Treated Wastewater of Prayagraj Region and Its Effect on nearby Ganges River. Vegetos 33, 258–264.
  19. Tripathi, V., Tripathi, P. and Gupta, D., (2014) Statistical approach for Lysosomal membrane proteins (LMPs) identificationSyst. Synth. Biol. 8(4):313-319.
  20. Tripathi, P., Yadav, B.S. and Tripathi, V., (2014) Molecular modeling and Phylogenetic Analysis of Esx homeobox-1 protein of Bubalus bubalis. Network Modeling Analysis in health Informatics and Bioinformatics. 3(57): 1-7.
  21. Mishra, P., Tripathi V. and Yadav, B.S. (2010) Insilco QSAR Modeling and Drug Development Process. GERF Bulletin of Biosciences, 1(1): 37-40.

Chapters in International Book:

  1. Pal, A.K., Singh, J., Soni, R., Tripathi, P., Kamle, M., Tripathi, V. and Kumar P. (2020) The role of microorganism in bioremediation for sustainable environment management. Bioremediation of Pollutants, 1, 227-242.

  2. Bora, H., Bui, S., Konyak, Z., Kamle, M., Tripathi, P., Kishore, A., Tripathi, V. and Kumar, P. (2019) Current Status and Future Prospects of Omics Tools in Climate Change Research, Microbial Genomics in Sustainable Agroecosystems, Springer,197-214.

  3. Kesari, K.K., Tripathi, P. and Tripathi, V (2018) Influence of Wastewater use in Agriculture: Advances in Human and Plant Health, Advances in Microbial Biotechnology 1, 232-246.

  4. Tripathi V. and Tripathi, P. (2017) Antibiotic Resistance Genes: An Emerging Environmental Pollutant. Perspectives in Environmental Toxicology, Springer. Edited by: Kavindra Kesari. ISBN: 9783319462486.

  5. Tripathi, P. and Tripathi, V. (2017) Determination of murG transferase as a potential drug target in Neisseria meningitides by spectral graph theory approach. Perspectives in Environmental Toxicology, Springer. Edited by: Kavindra Kesari. ISBN: 9783319462486.

Conferences

  1. International conference (CONIAPS-XXIII) organized by Nepal Academy of Science and Technology, Kadhmandu, Nepal.
  2. 14th International Conference of the International Academy of Physical Sciences (CONIAPS XIV), December 22-24, 2011 at SVNIT, Surat (India).
  3. 13th International Conference of the International Academy of Physical Sciences (CONIAPS XIII), June 14-16, 2011 at UPES, Dehradun (India).
  4. 12th International Conference of the International Academy of Physical Sciences (CONIAPS XII), December 22-24, 2010 at University of Rajasthan, Jaipur.
  5. National Seminar on “Contemporary Research in Material Science and Chemical Biology” 31st January to 22nd February 2010, at the Department of Chemistry, University of Allahabad, Allahabad.
  6. National Instructional Workshop on Graph Theory and its Application (May 23-28 2011), held at DST-Center for Interdisciplinary Mathematical Sciences, BHU,Varanasi.
  7. CONIAPS XI, 11 th International Conference of IAPS, February 20-22, 2010, at University of Allahabad, Allahabadnternational Seminar-cum-training workshop on “Molecular Modeling, Protein-Protein Interactions and Computer Aided Drug Design”, March 20-22, 2010, held at the Center of Bio-informatics, University of Allahabad, Allahabad.
  8. Second science Conclave: A Congregation of nobel laureates at IIIT, Allahabad during December 08-14, 2009.
  9. National workshop on “Applied bioinformatics-Advanced Topics in Protein-Ligand interactions” march 26-27, 2007 at Vittal Mallya Scientific Research foundation, Bangalore.
  10. International workshop on Frontiers in Nanobiotechnology, 1 st December atcenter of Biotechnology, University of Allahabad, Allahabad.

Teaching Experience

  1. Presently I am teaching at Department of Computational Biology and Bioinformatics, JIBB, SHUATS, Prayagraj.
  2. Guest Faculty at University of Allahabad, JUL 2017 - NOV 2018
  3. Guest Faculty at University of Allahabad, AUG 2008 - JUN 2009

Other

Fellowships and Awards
1. Young Scientist Award (2019) at 24 th International Conference of the
International Academy of Physical Sciences (CONIAPS XXIV), August 9-11, 2019
at  CH. Charan Singh University, Merrut (India).
2. ARO-Post Doctorate Fellowship (2016-2017) for Post Doctorate Research in
Agricultural Research Organization, Bet Dagan, Israel.
3. PBC-VATAT fellowship (2012-2015) for Post Doctorate Fellow at Weizmann
Institute of Science, Rehovot, Israel.
4. Award of University Grants Commission (UGC) research fellowship for pursuing
Doctoral Studies from 2009 to 2012.


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