+91-+91-9451770449
pramod.yadav@shuats.edu.in
Department of Computational Biology & Bioinformatics
+91-+91-9451770449
pramod.yadav@shuats.edu.in
Department of Computational Biology & Bioinformatics
Educational Details
Graduated in 2014
Graduated in 2006
Graduated in 2003
Graduated in 2000
Professional Summary
Pramod Kumar Yadav is working as Associate Professor in the Department of Computational Biology and Bioinformatics at Sam Higginbotom University of Agriculture, Technology And Sciences, Prayagraj (U.P.), India. He has graduated in Pharmacy from C.C.S. University, Meerut, India and post graduated in IT (specialization in Bioinformatics) from Indian Institute of Information Technology (IIIT), Allahabad, India. He has qualified GATE-2003 and 2004 and got scholarship from MHRD, New Delhi during his M.Tech. study. Dr. Yadav has an experience of 18.5 years in teaching and research in the field of Bioinformatics. He has published 40 research papers in reputed international and national journals. He has edited one Book titled "Bioinformatics: Concepts and Applications" and contributed 05 chapters in several books. He is editor/reviewer of several international journals such as PLoS ONE, The Journal of Biological Databases and Curation, Applied Microbiology and Biotechnology, Genomics, Interdisciplinary Sciences: Computational Life Sciences, Current Computer Aided Drug Design, Computers in Biology and Medicine, Journal of Computational Biology, Journal of Cellular Biochemistry, Dr. Yadav has supervised 03 Ph.D., 11 M.Tech. and 07 M.Sc. students in their thesis work. At present 2 Ph.D. scholars are pursuing Doctoral research under his supervision. Furthermore, he has delivered 4 invited lectures on various topics in International/ National Conferences/seminars. He has participated in 25 conferences/ workshops/symposia/seminars. His areas of research interest include, drug target identification, molecular modeling, docking, structure based drug design, molecular dynamics simulation, in silico epitope prediction and NGS data analysis.
Area of Specialization
BioinformaticsExpertise
Drug target identification, Molecular modeling, Docking, Structure based drug design, Molecular dynamics simulation, in silico epitope prediction and NGS data analysis
Intellectual Property
Details of Patents/Copyrights
S. No. | Patent / Copyright Title
| Name of Applicant(s)
| Patent No./ Copyright No.
| Award Date
| Agency | Status
|
1. | INTELLIGENT ASSEMBLY (PATENT) | Babasaheb Satpute, Dr. Raghav Yadav, Dr. Pramod K. Yadav, Dr. Satendra Singh | Docket No 36975/ Application No 201821030110/ Pub. No. 07/2020/ Pub. Date: 14/02/2020 | 2018 | Indian | Published |
2. | DEEP NEURAL NETWORK FOR PROTEIN CLASSIFICATION (Copyright) | Babasaheb Satpute, Dr. Raghav Yadav, Dr. Pramod K. Yadav, Dr. Satendra Singh | Registration Number: SW-11659/2018 | 2018 | Indian | Registered |
3. | A NOVEL METHOD FOR PROTEIN FAMILY PREDICTION (Copyright) | Babasaheb Satpute, Dr. Raghav Yadav, Dr. Pramod K. Yadav, Dr. Satendra Singh
| Registration Number: L-77728/2018 | 2018 | Indian | Registered |
4. | PROBABILISTIC APPROACH FOR PROTEIN CLASSIFICATION (Copyright) | Babasaheb Satpute, Dr. Raghav Yadav, Dr. Pramod K. Yadav, Dr. Satendra Singh | Registration Number: L-77769/2018 | 2018 | Indian | Registered |
5. | SVM BASED APPROACH FOR PROTEIN FAMILY IDENTIFICATION (Copyright) | Babasaheb Satpute, Dr. Raghav Yadav, Dr. Pramod K. Yadav, Dr. Satendra Singh | Registration Number: L-77465/2018 | 2018 | Indian | Registered |
6. | VmTDB: VIGNA MUNGO TRANSCRIPTOME DATABASE (Copyright) | Iquebal, MA; Jasrotia, RS; Yadav, PK; Sarika; Kumar, N; Angadi, UB; Rai, A and Kumar , D | Registration Number: SW-15268/2022 | 2022 | Indian | Published |
Projects
1. “Inhibitor designing and phylogenetic analysis of phosphodiesterase-4 enzyme in Homo sapiens” funded by Sam Higginbottom Institute of
Agriculture, Technology and Sciences-Deemed University, Allahabad- 211007 (U.P.) completed in 2015.
2. In-house Research Project titled "Drug Target Identification and Inhibitor Designing Against Giardia lamblia Using Computational Approaches"
granted by SHUATS, Prayagraj-211007 (U.P.) (Undergoing).
Publications
PUBLICATIONS, PEER REVIEWED
*Corresponding Author
Book(s)
1. Bioinformatics: Concepts and Applications, Editors: Singh S, Gautam B, Kumar D, Guru GR, Yadav PK, Shanti VR (1st Edition, 2022), published by Satish Serial Publishing House, Delhi, India. ISBN: 9789390425310.
Book Chapters
1. Yadav, P.K.*, Jasrotia, R. and Jaiswar, A. (2022). "Genome informatics: Present status and Future Prospects in agriculture” in the Book Bioinformatics in Agriculture: Next Generation Sequencing Era, 1st Ed. 2022 (Editors: Sharma, P., Yadav, D., Gaur, R.) published by Academic Press Publications (Elsevier), Ch. 4, pp 47-59. ISBN: 978-0323897785.
2. Nivedita, Gautam, B. and Yadav, P.K.* (2022). "Microarray Data Analysis in Agri-Informatics" in the Book Bioinformatics: Concepts and Applications (Editors: Singh S, Gautam B, Kumar D, Guru GR, Yadav PK, Shanti VR) published by Satish Serial Publishing House, Ch. 4, pp 67-104. ISBN: 9789390425310.
3. Tandon, G., Maurya, N.S., Tandon, B., Yadav, P.K., Singh, S. and Shanti, V.R. (2022). “Bioinformatics Approaches in Tomato Genome Studies” in the Book Bioinformatics: Concepts and Applications (Editors: Singh S, Gautam B, Kumar D, Guru GR, Yadav PK, Shanti VR) published by Satish Serial Publishing House, Ch. 7, pp 151-163. ISBN: 9789390425310.
4. Annapragada, H., Maurya, N.S., Tandon, B., Singh, A.W., Singh, A.K., Yadav, P.K., Singh, S. and Kumar, D. (2022). “Chemoinformatics: An Overview, Current Status and Future Prospects” in the Book Bioinformatics: Concepts and Applications (Editors: Singh S, Gautam B, Kumar D, Guru GR, Yadav PK, Shanti VR) published by Satish Serial Publishing House, Ch. 3, pp 57-66. ISBN: 9789390425310.
5. Yadav, PK*, Singh, S, Seniya, C., Singh, AK, Khan, GJ (2011). "Structure based drug design approaches in drug discovery" in. the book Current Topics in Biotechnology and Microbiology (Editors: Dhingra, H., Jha, P.N., Bajpai, P.) published by Lap Lambert Academic Publishing AG & Co. KG Dudweller Landstr, Germany, Ch 9, pp 178-195. ISBN: 978-3844329759.
*Corresponding Author
Conferences
PRESENTATIONS (ORAL/POSTER)
1. Presented a paper titled “Dangerous Farm Insects Detection Using Transfer Learning and CNN. 2nd IEEE International Conference on Futuristic Technologies–2023 (INCOFT) held on November 24-26, 2023 organized S.G.Balekundri Institute of Technology, Belagavi-590010 Karnataka, India.
2. Presented an ePoster titled “Prediction of T-cell and B-cell epitopes for merozoites surface protein (MSP119) for Plasmodium yeolii using computational techniques” in 3rd International Conference On Integrative Biology held on Aug 04-06, 2015 at Valencia, Spain. http://integrativebiology.conferenceseries.com/eposter-presentation.php
3. Presented a poster titled “In silico drug target identification and homology modeling in Legionella pneumophila” in International Symposium on Current Trends in Drug Discovery Research held on Feb. 26-28, 2013 at CDRI, Lucknow (U.P.), India.
4. Presented a poster titled “In silico epitope prediction for glycoprotein-G in Nipah virus: an alternative approach to antiviral resistance” in 2nd National Conference on Antimicrobial Resistance: A Cause for Global Concern’ held on Feb. 6-8, 2012 at SHIATS (DU), Allahabad (U.P.), India.
5. Presented a poster titled “Homology modeling of alpha-TIF protein for Herpes simplex virus causing encephalitis” in National Conference on “Antimicrobial Resistance: from emerging threat to reality” held on Mar. 23-25, 2009 at AAI-DU, Allahabad (U.P.), India.
CONFERENCES/SEMINARS/WORKSHOPS/SYMPOSIA ATTENDED
2nd IEEE International Conference on Futuristic Technologies – 2023 (INCOFT) held on November 24-26, 2023 organized S.G.Balekundri Institute of Technology, Belagavi, Karnataka, India.
National Conference/CME on "Infection Prevention Control in Health Care Settings & Impact of COVID-19 on Mental Health" held on April 3rd, 2023 organized by Dept. of Microbiology, MLN Medical College, Prayagraj (U.P.).
International E-conference on "Emerging Trends in Agriculture and Biological Sciences" held during January, 14-15, 2022, jointly organized by SBBS and ARDO, India.
International E-Conference on “Agricultural and Biological Sciences 2020” held during December 18-19, 2020 jointly organized by SBBS and ARDO, India.
International Conference on ”Advances and Innovations in Biotechnology for Sustainable development (AIBioSD- 2019)” held during April 5-7, 2019 at AKS University, Satna (M.P.), India.
Workshop on “World Intellectual Property Day” held on April 26, 2017 at Directorate of IPC, SHUATS, Allahabad (U.P.), India.
International Conference on “Advancing Frontiers in Biotechnology for Sustainable Agriculture and Health” held on Feb 25-26, 2016 at SHIATS-DU, Allahabad (U.P.), India.
National Conference on “Bioinformatics Panorama in Agriculture and Health ” held on Oct 5-6, 2015 at SHIATS-DU, Allahabad (U.P.), India.
National Workshop on “Creation and Establishment of Virtual Classroom & e-Learning” held on May 5-6, 2015 at SHIATS-DU, Allahabad (U.P.), India.
World Congress on “Green Nanotechnology and its Role in Sustainable Agriculture (GNSA- 2015)” held on March 26-27, 2015 organized by SHIATS-DU, Allahabad in collaboration with University of Missouri, USA.
International Conference on “Health, Environment and Industrial Biotechnology (BioSangam 2013)” held on 21-23rd September, 2013 at Motilal Nehru National Institute of Technology (MNNIT), Allahabad (U.P.), India.
International Symposium on “Current Trends in Drug Discovery Research” held on Feb. 26-28, 2013 at Central Drug Research Institute (CDRI), Lucknow (U.P.), India.
Workshop on “Cloud computing” organized by RADS in association with Computer Society of India (CSI-student branch) held on Sept. 01-02, 2012 at SHIATS-DU, Allahabad (U.P.), India.
National Conference on “Antimicrobial Resistance: A Cause for Global Concern” held on Feb. 6-8, 2012 at SHIATS (DU), Allahabad (U.P.), India.
Workshop on “Scientific paper writing” organized by National Academy of Sciences, India (NASI) held on Jan. 06-08, 2012 at SGPGI, Lucknow (U.P.), India.
National seminar on “Advances in Transgenic Technology & its impact on the National Economy” held on Apr. 23, 2010, organized by Society of Biotechnology, SHIATS-DU, Allahabad (U.P.), India.
National Conference on “Antimicrobial Resistance: from emerging threat to reality” held on Mar. 23-25, 2009 at AAI-DU, Allahabad (U.P.), India.
National Workshop on “Intellectual Property Rights” held on Mar. 31- Apr. 1st, 2007 at Indian Institute of Technology, Kanpur (U.P.), India.
1st National Workshop on ‘‘Immunology & Immunoinformatics’’ held on Feb. 14-15, 2006 at Sri Ramachandran Medical College & Research Institute, Chennai (TM), India.
Participated & volunteered in Indo-Russian International Seminar on ‘‘Recent trends in Applied Bioinformatics and Medi-informatics’’ held on Nov. 6-7, 2005 at IIIT, Allahabad (U.P.), India.
Teaching Experience
TEACHING EXPERIENCE (18.5 Years)
Other
AWARDS/ HONOURS/ ACHIEVMENTS
INVITED LECTURES
1. Delivered a Lecture as Invited Speaker on "Computational approaches for designing the vaccines against pathogenic organism" in a Workshop at the Department of Medical Laboratory Technology, College of Health and Medical Techniques, Baghdad, Iraq on 13/04/2021.
2. Delivered a Lecture as Invited Speaker on ”Computer Aided Drug Design: A holistic approach” in 3 Days International Conference entitled ”Advances and Innovations in Biotechnology for Sustainable development (AIBioSD- 2019)” on 06/04/2019 at AKS University, Satna (M.P.), India.
3. Certificate of Appreciation for Delivering a Guest Lecture on 'Bioinformatics' in Ewing Christian College affiliated to University of Allahabad (Central University), Allahabad on 28/03/2018.
4. 2018 Delivered a Lecture as Invited Speaker on ”Computer Aided Vaccine Design” in 7 Days National Workshop entitled ”Protein Purification and its Sustainable Application in Drug Designing and Agro waste Management” on 09/10/2018 at SHUATS, Allahabad, India.
PROFESSIONAL EXPERIENCE
Member, Editorial board, International Journal of Bioinformatics and Biological Sciences
Member, Editorial board, Journal of Bioinformatics, Proteomics and Image Analysis
PROFESSIONAL MEMBERSHIPS AND ACTIVITIES
Co- Organizing Secretary, National Conference on “Emerging trends in Bioinformatics for Agriculture, Food and Health (ETBAFH) held on March 15-16, 2023 organized by Society of Bioinformatics, Department of Computational Biology and Bioinformatics, JIBB, SHUATS, Prayagraj (U.P.) In collaboration with Indian Institute of Information Technology Allahabad (IIIT-A), Prayagraj (U.P.), India.
Member, Technical Committee for screening of Abstracts/Papers, National Conference on “Emerging trends in Bioinformatics for Agriculture, Food and Health (ETBAFH) held on March 15-16, 2023 at Department of Computational Biology and Bioinformatics, JIBB, SHUATS, Prayagraj (U.P.), India.
Member, Organizing Committee, in 3 Days International Conference entitled ”Advances and Innovations in Biotechnology for Sustainable development (AIBioSD- 2019)” held on April 5-7, 2019 at AKS University, Satna (M.P.), India.
Treasurer, National Conference on ”Bioinformatics Panorama in Agriculture & Health” held on Oct. 5-6, 2015 organized by the Dept. of Computational Biology & Bioinformatics, SHIATS-DU, Allahabad (U.P.), India.
Member, Technical Review Committee for screening of Abstracts/Papers, National Conference on ”Bioinformatics Panorama in Agriculture & Health” to he held on Oct. 5-6, 2015 at SHIATS-DU, Allahabad.
Founder Executive member of Society for Bioinformatics & Biological Sciences, Allahabad (U.P.), India.
Life Time Member, Society of Bioinformatics (SoBI), Dept. of Computational Biology & Bioinformatics, SHIATS-DU, Allahabad (U.P.), India.
Life Time Member, BIOinformatics CLUb for Experimenting Scientists (BIOCLUES) Society (Bioclues.org).
Member, UG and PG Board of studies, Dept. of Computational Biology & Bioinformatics, SHIATS-DU, Allahabad (U.P.), India.
Member, PG Board of studies, Dept. of Molecular and Cellular Engineering, SHIATS-DU, Allahabad (U.P.), India.
Member, Examination cell, Jacob School of Biotechnology & Bioengineering, SHIATS-Deemed University, Allahabad (2009-2010).
Designed syllabus of several courses such as Biomolecular modelling, Computere Aided Drug Designing, Chemoinformatics, Immunoinformatics for B.Tech, M. Tech. & Ph.D. (Bioinformatics) programs.
Contributed in designing practical manuals of B.Tech. and M. Tech. Level courses in the Dept. of Computational Biology & Bioinformatics.
Appointed as Recording secretary in UG and PG Board of Studies of Department of Compuational Biology & Bioinformatic, SHIATS on June, 01, 2016.
Member, Weekly Class Schedule (WCS) Comittee , Jacob School of Biotechnology & Bioengineering, SHUATS, Prayagraj (U.P.).
Member, Admission and Promotion Committee of JIBB (Institute) (Session: 2024-25).
TRAINING / ORIENTATION/ WORKSHOP
Participated in 21 days Orientation Program organized by UGC-Academic staff college, University of Allahabad, sponsered by University Grant Commission, New Delhi held during May 22 – June 18, 2014.
THESES SUPERVISED
A. List of Ph.D. and P.G. Theses Supervised:
S. N. | Program | Title of the Thesis | Name of Candidate & P.I.D No. | Year |
1. | Ph.D. | Next-generation sequencing (NGS) based genomics data analysis and development web genomic resources of genus Vigna | Mr. Rahul Singh Jasrotia (15PHBIN104) | 2020 |
2. | Ph.D. | Comparative analysis of different development stages of Glycine max seed by microarray data | Ms. Nivedita (14PHBIN105) | 2021 |
3. | Ph.D. (Submitted) | Drug target identification, characterization and drug designing for Mycobacterium abscessus sub-species bolletii: An in silico approach | Mr. Rohit Sahu (14PHBIN101) | 2024 |
4. | M. Tech. | In silico epitope prediction for glycoprotein D in Human Herpes simplex virus-1 | Mr. Raghuvir Singh (07MTBT009) | 2009 |
5. | M. Tech. | Virtual screening of curcumin analogues against epidermal growth factor receptor (EGFR): an oncogenic drug target | Ms. Shambhavi Srivastava (08MTBINF004) | 2010 |
6. | M. Tech. | In silico drug target identification in Legionella pneumophila and homology modelling of the potential target | Mr. Hemant K. Pandey (10MTBINF003) | 2012 |
7. | M. Tech. | Virtual screening and phylogenetic analysis of sortase-A in Staphylococcus aureus | Mr. Sanjay K. Malhotra (11MTBINF005) | 2013 |
8. | M. Tech. | In silico putative drug target identification in Enterobacter cloaceae and homology modelling of candidate drug target | Ms. Sudha Shukla (11MTBINF005) | 2013 |
9. | M. Tech. | In silico inhibitor designing for GGDEF domain of di-guanylate cyclase (DGC) as a potential drug target in various pathogenic bacteria | Mr. Sarvesh Kumar Pathak (12MTBINF010) | 2014 |
10. | M. Tech. | Virtual screening and phylogenetic analysis for Phosphodiesterase 4D in Homo sapiens | Mr. Rajat Kumar Saraf (12MTBINF011) | 2014 |
11. | M. Tech. | Computational analysis of multi-target character of curcumin in inflammatory diseases | Mr. Anand K. Maurya (13MTBINF007) | 2015 |
12. | M. Tech. | Protein-protein interaction network (PPIN) analysis and in silico knockout simulation for identification of novel drug targets in Leishmania donovani | Mr. Ranjeet Maurya (14MTBINF004) | 2016 |
13. | M. Tech. | NGS variant analysis of acute myeloid leukemia (AML) cells in human | Mr. Gaurav Bhagat (15MTBINF001) | 2017 |
14. | M. Tech. | Identification of Potential PhoP Inhibitors in Staphylococcus aureus: An Approach to Combat Antimicrobial Resistance | Ms. Rashmi Srivastava (22MTBINF001) | 2024 |
15. | M. Sc. | Cytotoxicity and cell cycle analysis of Vanadium compounds on HeLa cells | Ms. Permita Kar (ID: 07MSCBT047) | 2009 |
16. | M. Sc. | AsthaDb: A Database of Asthma Disease | Mr. Govind Sharma (10MSBINF004) | 2012 |
17. | M. Sc. | Diagnosis of Diabetes using ANN and SVM Classifiers under WEKA Environment | Mr. Sudhanshu Caudhary (11MSBINF003) | 2014 |
18. | M. Sc. | Prediction of T-cell/B-cell epitopes for MSP119 protein in Plasmodium yeolii using computational techniques | Ms. Kalyani Dhusia (12MSBINF004) | 2014 |
19. | M. Sc. | Structure modelling, dynamics simulation and docking studies of human N-formyl peptide receptor 1 protein | Mr. Vivek Kumar (19MSBINF001) | 202 |
B. List of Ph.D. and PG Theses Co-Supervised:
S. No. | Program | Title of the Thesis | Name of Candidate & P.I.D No. | Year |
1. | Ph.D. | Surface invariant coordinates based machine learning approach for protein classification | Mr. Satpute Baba Saheb S. (14PHCOE210) | 2020 |
2. | M. Tech. | Sequence analysis and homology modeling of cold adapted lipase of an antarctic psychrophilic sp. | Mr. Jaikee Kumar Singh (11MTBINF012) | 2013 |
3. | M. Tech. | Structure Prediction of RecA protein in Mycobacterium leprae and Virtual Screening against PubChem Bacterial Inhibitors | Mr. Vivek K. Srivastava (21MTBINF007) | 2014 |
4. | M. Sc. | Comparative proteomics analysis of 1-aminocyclopropane-1-carboxylate (ACC) deaminase producing plant growth promoting rhizobacteria | Ms. Sudha Kumari Yadav (12MSBINF002) | 2014 |
5. | M. Tech. | Genome-Wide Identification of the PYL/PYR/RCAR Gene Family in Cicer arietinum | Ms. Harika Annapragada (ID: 10MTBINF003) | 2018 |
6. | M. Sc. | Assessment of L-Dopa content in different tissues of Mucuna pruiens var. pruiens and 3D structure modelling of mucunain protein | Ms. Enish Kujur (18MSCBT018) | 2021 |
7. | M. Sc. | In–silico screening of anti-staphylococcal plant derived compounds | Km. Archna Tiwari (ID: 19MSCMB012) | 2021 |
8. | M. Sc. | Effect of phosphate solubilizing bacteria on the growth of tomato plants under pot conditions and prediction of genomic island of the bacterial isolated strain | Ms. Shipra Kumari (19MSCMB006) | 2022 |
9. | M. Sc. | Effect of phosphate solubilizing bacteria on the growth of Chilli plants (Capsicum frutescence L.) under pot conditions and prediction of genomic island of the isolated bacterial strain | Ms. Khushboo Yadav (19MSCMB012) | 2022 |
10. | M. Sc. | Sequence Analysis of Candida albicans isolated from infected nails samples | Ms. Archana Masih (18MSCMB001) | 2022 |
C. Member, Student Advisory Committee (SAC) of Ph.D. Theses:
S. No. | Program | Title of the Thesis | Name of Candidate & P.I.D No. | Year |
1. | Ph.D. | Computational approach for identification of biotic stresses responsive genes and the host-pathogen interaction study of deciphered R genes (Ve1 and Cf4) in Solanum lycopersicum (Tomato) | Ms. Gitanjali Tandon (13PHBIN210) | 2018 |
2. | Ph.D. | Development of uCAREChemSuiteCLI and uCARE Chem Suite: AR package and an online tool to predict bacterial resistome for antibiotic structures | Mr. Saurav B. Saha (14PHBIN102) | 2020 |
3. | Ph.D. | Next-Generatlon transcriptome sequencing approach for ldentification of metabolic and gene regulatory network of Halliwell-Asada Pathway in relation to antioxidant activity in finger millet (Eleuslne coracana) | Mr. Himanshu Avashthi (14PHBIN213) | 2021 |
4. | Ph.D. | dentification of molecular mechanism involved in Wilson Disease due to copper toxicity through in silico and in vitro approach in human hepatoma cell line | Ms. Shikha Agnihotry (13PHBIN207) | 2021 |
5. | Ph.D. | Computational analysis of Parkinson disease-associated SNPs in DJ-1, PRKN, and VPS35 genes | Ms. Sapna Pandey (14PHBIN209 | 2023 |
6. | Ph.D. | Computational identification of bioactive inhibitor against Ebola Virus Proteins (VP40, VP24, VP30 and VP35) | MS. Anjali Rao (13PHBIN205) | 2024 |
7. | Ph.D. | Identification and analysis of the genomic islands of Bordetella pertussis Tohama I, Bordetella parapertussis 12822 and Bordetella bronchiseptica RB50 with emphasis on pathogenicity | Mr. Hari Om Sharn (14PHBIN211) | 2024 |